STexampleData

DOI: 10.18129/B9.bioc.STexampleData  

Collection of spatially-resolved transcriptomics datasets in SpatialExperiment Bioconductor format

Bioconductor version: Release (3.16)

Collection of spatially-resolved transcriptomics (SRT) datasets in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different SRT platforms and have been sourced from various publicly available sources. Several datasets include images and/or ground truth annotation labels.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STexampleData")

 

HTML	R Script	STexampleData package overview
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData
Version	1.6.0
License	MIT + file LICENSE
Depends	ExperimentHub, SpatialExperiment
Imports	utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, BumpyMatrix
SystemRequirements
Enhances
URL	https://github.com/lmweber/STexampleData
BugReports	https://github.com/lmweber/STexampleData/issues
Depends On Me
Imports Me
Suggests Me	ggspavis, nnSVG
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	STexampleData_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/STexampleData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/STexampleData
Package Short Url	https://bioconductor.org/packages/STexampleData/
Package Downloads Report	Download Stats