msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Provides the 'Molecular Signatures Database' (MSigDB) gene
sets typically used with the 'Gene Set Enrichment Analysis' (GSEA)
software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>,
Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al.
2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package
includes the human genes as listed in MSigDB as well as the
corresponding symbols and IDs for frequently studied model organisms
such as mouse, rat, pig, fly, and yeast.
| Version: |
10.0.0 |
| Depends: |
R (≥ 4.1) |
| Imports: |
babelgene (≥ 22.9), dplyr (≥ 1.1.1), lifecycle, methods, rlang, tibble, tidyselect (≥ 1.2.0) |
| Suggests: |
knitr, msigdbdf, rmarkdown, roxygen2, testthat |
| Published: |
2025-03-12 |
| DOI: |
10.32614/CRAN.package.msigdbr |
| Author: |
Igor Dolgalev 
[aut, cre] |
| Maintainer: |
Igor Dolgalev <igor.dolgalev at nyumc.org> |
| BugReports: |
https://github.com/igordot/msigdbr/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://igordot.github.io/msigdbr/ |
| NeedsCompilation: |
no |
| Additional_repositories: |
https://igordot.r-universe.dev |
| Materials: |
README NEWS |
| In views: |
Omics |
| CRAN checks: |
msigdbr results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: |
GSDA, massiveGST |
| Reverse imports: |
autoGO, AutoPipe, CatsCradle, ChromSCape, escape, hypeR, MAGeCKFlute, netgsa, pathfindR, POMA, projectR, RVA, scFeatures, scITD, scTGIF, singleCellTK, zenith |
| Reverse suggests: |
CAESAR.Suite, CRISPRball, EnrichmentBrowser, epiregulon.extra, fgsea, gCrisprTools, GeneNMF, GenomicSuperSignature, grandR, hacksig, OlinkAnalyze, pairedGSEA, Platypus, rGREAT, sparrow, tidybulk |
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