Last updated on 2025-03-13 15:51:23 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 3.46 | 37.87 | 41.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 2.54 | 28.11 | 30.65 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 76.19 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 90.48 | OK | |||
| r-devel-macos-arm64 | 1.1.4 | 30.00 | OK | |||
| r-devel-macos-x86_64 | 1.1.4 | 66.00 | OK | |||
| r-devel-windows-x86_64 | 1.1.4 | 5.00 | 0.00 | 5.00 | FAIL | |
| r-patched-linux-x86_64 | 1.1.4 | OK | ||||
| r-release-linux-x86_64 | 1.1.4 | 3.30 | 35.56 | 38.86 | OK | |
| r-release-macos-arm64 | 1.1.4 | 46.00 | OK | |||
| r-release-macos-x86_64 | 1.1.4 | 104.00 | OK | |||
| r-release-windows-x86_64 | 1.1.4 | 4.00 | 108.00 | 112.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 57.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.4 | 6.00 | 122.00 | 128.00 | ERROR |
Version: 1.1.4
Check: tests
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### Title: Test the probability of cluster-mass statistics over a range of
> ### threshold values
> ### Aliases: walk_threshold_steps
>
> ### ** Examples
>
> ## Don't show:
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> ## End(Don't show)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 3.06 0.47 9.75 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [44s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.11.3
Commit d63adeda50 (2025-01-21 19:42 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 48 × AMD EPYC 7443 24-Core Processor
WORD_SIZE: 64
LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 96 virtual cores)
nothing
ℹ Starting Julia with 2 threads
✔ Starting Julia with 2 threads [7.6s]
ℹ Activating package environment
✖ Activating package environment [8.6s]
i Starting Julia with 2 threads
v Starting Julia with 2 threads [7.6s]
i Activating package environment
x Activating package environment [2.3s]
[ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-a-logging.R:7:1'): (code run outside of `test_that()`) ─────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] #show_update#170
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:2549 [inlined]
[8] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:1495
[9] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:1480 [inlined]
[10] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; shared::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::@Kwargs{io::Base.DevNull})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:258
[11] develop(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.DevNull, kwargs::@Kwargs{})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:159
[12] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:148 [inlined]
[13] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:146 [inlined]
[14] develop(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::String, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::@Kwargs{io::Base.DevNull})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:176
[15] top-level scope
@ string:1
[16] eval
@ .\boot.jl:430 [inlined]
[17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[18] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[19] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[20] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[21] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[22] evaluate!
@ D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[23] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[24] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[25] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm:::set_projenv(cache_dir = tempdir(), verbose = TRUE) at test-aaa-a-logging.R:7:1
2. └─JuliaConnectoR::juliaEval("Pkg.develop(path = \"JlmerClusterPerm\", io = devnull)")
3. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
4. ├─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
9. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] add_snapshot_to_undo(env::Nothing)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1496
[8] add_snapshot_to_undo
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1492 [inlined]
[9] activate(path::String; shared::Bool, temp::Bool, io::Base.DevNull)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1372
[10] top-level scope
@ string:1
[11] eval
@ .\boot.jl:430 [inlined]
[12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[13] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[14] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[15] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[16] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[17] evaluate!
@ D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[18] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[19] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[20] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. └─jlmerclusterperm:::set_projenv(cache_dir = cache_dir, verbose = verbose)
7. └─JuliaConnectoR::juliaEval("Pkg.activate(\".\", io = devnull)")
8. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
9. ├─base::tryCatch(...)
10. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
11. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
13. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
14. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: `rng` not defined in `Main`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:430 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[4] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[8] evaluate!
@ D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[11] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] add_snapshot_to_undo(env::Nothing)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1496
[8] add_snapshot_to_undo
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1492 [inlined]
[9] activate(path::String; shared::Bool, temp::Bool, io::Base.DevNull)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1372
[10] top-level scope
@ string:1
[11] eval
@ .\boot.jl:430 [inlined]
[12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[13] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[14] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[15] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[16] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[17] evaluate!
@ D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[18] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[19] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[20] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. └─jlmerclusterperm:::set_projenv(cache_dir = cache_dir, verbose = verbose)
4. └─JuliaConnectoR::juliaEval("Pkg.activate(\".\", io = devnull)")
5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
11. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [65s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.11.3
Commit d63adeda50 (2025-01-21 19:42 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 56 × Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz
WORD_SIZE: 64
LLVM: libLLVM-16.0.6 (ORCJIT, broadwell)
Threads: 1 default, 0 interactive, 1 GC (on 56 virtual cores)
nothing
ℹ Starting Julia with 2 threads
✔ Starting Julia with 2 threads [16s]
ℹ Activating package environment
✖ Activating package environment [11.3s]
i Starting Julia with 2 threads
v Starting Julia with 2 threads [9.7s]
i Activating package environment
x Activating package environment [3s]
[ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-a-logging.R:7:1'): (code run outside of `test_that()`) ─────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] #show_update#170
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:2549 [inlined]
[8] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:1495
[9] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Operations.jl:1480 [inlined]
[10] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; shared::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::@Kwargs{io::Base.DevNull})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:258
[11] develop(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.DevNull, kwargs::@Kwargs{})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:159
[12] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:148 [inlined]
[13] develop
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:146 [inlined]
[14] develop(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::String, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::@Kwargs{io::Base.DevNull})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:176
[15] top-level scope
@ string:1
[16] eval
@ .\boot.jl:430 [inlined]
[17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[18] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[19] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[20] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[21] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[22] evaluate!
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[23] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[24] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[25] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm:::set_projenv(cache_dir = tempdir(), verbose = TRUE) at test-aaa-a-logging.R:7:1
2. └─JuliaConnectoR::juliaEval("Pkg.develop(path = \"JlmerClusterPerm\", io = devnull)")
3. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
4. ├─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
9. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] add_snapshot_to_undo(env::Nothing)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1496
[8] add_snapshot_to_undo
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1492 [inlined]
[9] activate(path::String; shared::Bool, temp::Bool, io::Base.DevNull)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1372
[10] top-level scope
@ string:1
[11] eval
@ .\boot.jl:430 [inlined]
[12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[13] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[14] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[15] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[16] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[17] evaluate!
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[18] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[19] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[20] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. └─jlmerclusterperm:::set_projenv(cache_dir = cache_dir, verbose = verbose)
7. └─JuliaConnectoR::juliaEval("Pkg.activate(\".\", io = devnull)")
8. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
9. ├─base::tryCatch(...)
10. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
11. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
13. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
14. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: `rng` not defined in `Main`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:430 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[4] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[8] evaluate!
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[11] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: `Distributions=31c24e10-a181-5473-b8eb-7969acd0382f` depends on `Test=8dfed614-e22c-5e08-85e1-65c5234f0b40`, but no such entry exists in the manifest.
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:68
[2] validate_manifest(julia_version::VersionNumber, manifest_format::VersionNumber, stage1::Dict{String, Vector{Pkg.Types.Stage1}}, other::Dict{String, Any})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:135
[3] Pkg.Types.Manifest(raw::Dict{String, Any}, f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:203
[4] read_manifest(f_or_io::String)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\manifest.jl:226
[5] Pkg.Types.EnvCache(env::Nothing)
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:373
[6] EnvCache
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\Types.jl:351 [inlined]
[7] add_snapshot_to_undo(env::Nothing)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1496
[8] add_snapshot_to_undo
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1492 [inlined]
[9] activate(path::String; shared::Bool, temp::Bool, io::Base.DevNull)
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.11\Pkg\src\API.jl:1372
[10] top-level scope
@ string:1
[11] eval
@ .\boot.jl:430 [inlined]
[12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:2734
[13] include_string (repeats 2 times)
@ .\loading.jl:2744 [inlined]
[14] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[15] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base .\essentials.jl:1055
[16] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:1052
[17] evaluate!
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [inlined]
[18] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[19] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[20] (::Main.RConnector.var"#3#5")()
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:145
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. └─jlmerclusterperm:::set_projenv(cache_dir = cache_dir, verbose = verbose)
4. └─JuliaConnectoR::juliaEval("Pkg.activate(\".\", io = devnull)")
5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
11. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64