Last updated on 2024-12-25 03:50:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 11.13 | 101.81 | 112.94 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 7.63 | 113.40 | 121.03 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 291.91 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 286.86 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.0 | 14.00 | 163.00 | 177.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.0 | 11.43 | 96.35 | 107.78 | NOTE | |
| r-release-linux-x86_64 | 1.0.0 | 10.39 | 94.99 | 105.38 | NOTE | |
| r-release-macos-arm64 | 1.0.0 | 79.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 117.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 12.00 | 154.00 | 166.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 79.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 178.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 15.00 | 202.00 | 217.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(aPEAR)
>
> test_check("aPEAR")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-prepareEnrichment.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cluster.R:63:3'): pathwayClusters filters out by cluster size ──
Error in `pathwayClusters(sim, method = "s", minClusterSize = 13)`: No clusters found.
Backtrace:
▆
1. └─aPEAR:::pathwayClusters(sim, method = "s", minClusterSize = 13) at test-cluster.R:63:3
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.0
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘aPEAR-vignette.Rmd’ due to unavailable dependencies:
'clusterProfiler'
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(aPEAR)
>
> test_check("aPEAR")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-prepareEnrichment.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cluster.R:63:3'): pathwayClusters filters out by cluster size ──
Error in `pathwayClusters(sim, method = "s", minClusterSize = 13)`: No clusters found.
Backtrace:
▆
1. └─aPEAR:::pathwayClusters(sim, method = "s", minClusterSize = 13) at test-cluster.R:63:3
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(aPEAR)
>
> test_check("aPEAR")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-prepareEnrichment.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cluster.R:63:3'): pathwayClusters filters out by cluster size ──
Error in `pathwayClusters(sim, method = "s", minClusterSize = 13)`: No clusters found.
Backtrace:
▆
1. └─aPEAR:::pathwayClusters(sim, method = "s", minClusterSize = 13) at test-cluster.R:63:3
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(aPEAR)
>
> test_check("aPEAR")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-prepareEnrichment.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cluster.R:63:3'): pathwayClusters filters out by cluster size ──
Error in `pathwayClusters(sim, method = "s", minClusterSize = 13)`: No clusters found.
Backtrace:
▆
1. └─aPEAR:::pathwayClusters(sim, method = "s", minClusterSize = 13) at test-cluster.R:63:3
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(aPEAR)
>
> test_check("aPEAR")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-prepareEnrichment.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cluster.R:63:3'): pathwayClusters filters out by cluster size ──
Error in `pathwayClusters(sim, method = "s", minClusterSize = 13)`: No clusters found.
Backtrace:
▆
1. └─aPEAR:::pathwayClusters(sim, method = "s", minClusterSize = 13) at test-cluster.R:63:3
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'clusterProfiler', 'DOSE'
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64