Last updated on 2025-03-14 03:50:46 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 8.79 | 198.08 | 206.87 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 6.03 | 123.09 | 129.12 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 380.77 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 405.72 | OK | |||
| r-devel-macos-arm64 | 1.0.4 | 62.00 | OK | |||
| r-devel-macos-x86_64 | 1.0.4 | 116.00 | OK | |||
| r-devel-windows-x86_64 | 1.0.4 | 17.00 | 214.00 | 231.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.3 | OK | ||||
| r-release-linux-x86_64 | 1.0.3 | 7.97 | 183.82 | 191.79 | OK | |
| r-release-macos-arm64 | 1.0.4 | 71.00 | OK | |||
| r-release-macos-x86_64 | 1.0.4 | 111.00 | OK | |||
| r-release-windows-x86_64 | 1.0.4 | 11.00 | 203.00 | 214.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | 80.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.4 | 145.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.4 | 13.00 | 247.00 | 260.00 | OK |
Version: 1.0.4
Check: tests
Result: ERROR
Running 'testthat.R' [30s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library( testthat )
> library( PUMP )
>
> test_check("PUMP")
mdes grid result: d2.1_m2fr d_m
Varying across ICC.2
nbar: 80 J: 23 Tbar: 0.5
alpha: 0.05
Level:
1: R2: 0.6 (5 covariates)
2: fixed effects ICC: *** omega: 0.4
rho = 0
MTP d_m ICC.2 Adjusted.MDES D1indiv.power
None d2.1_m2fr 0.200 0.192 0.800
None d2.1_m2fr 0.400 0.257 0.800
0.005 <= MCSE <= 0.005
(max.steps = 20 tnum = 1000 start.tnum = 100 final.tnum = 4000 tol = 0.02)
sample result: d3.2_m3ff2rc d_m with 4 outcomes
target D3indiv power: 0.80
MDES vector: 0.2, 0.1, 0.05, 2
nbar: * J: 3 K: 10 Tbar: 0.5
alpha: 0.05
Level:
1: R2: 0.4 / 0.9 / 0.1 / 0.5 (5 covariates)
2: R2: 0.7 (3 covariates) ICC: 0 / 0.05 / 0.2 / 0.4 omega: 0
3: fixed effects ICC: 0.4 omega: 0
rho = 0.4
MTP Sample.type Sample.size D3indiv.power
BF nbar 21.48493 0.8
(max.steps = 20 tnum = 200 start.tnum = 20 final.tnum = 800 tol = 0.01)
mdes result: d3.2_m3ff2rc d_m with 4 outcomes
target min1 power: 0.80
nbar: 100 J: 3 K: 10 Tbar: 0.5
alpha: 0.05
Level:
1: R2: 0.4 / 0.9 / 0.1 / 0.5 (5 covariates)
2: R2: 0.7 (3 covariates) ICC: 0 / 0.05 / 0.2 / 0.4 omega: 0
3: fixed effects ICC: 0.4 omega: 0
rho = 0.4
MTP Adjusted.MDES min1.power SE
BF 0.0918287 0.8175 0.01
(8 steps in search)
(max.steps = 20 tnum = 400 start.tnum = 40 final.tnum = 1600 tol = 0.02)
[ FAIL 1 | WARN 0 | SKIP 42 | PASS 252 ]
══ Skipped tests (42) ══════════════════════════════════════════════════════════
• On CRAN (42): 'test-cor.R:32:5', 'test-designs_three.R:14:1',
'test-designs_two.R:13:1', 'test-grid_functions.R:30:3',
'test-grid_functions.R:141:3', 'test-grid_functions.R:168:3',
'test-grid_functions.R:197:3', 'test-grid_functions.R:246:3',
'test-grid_functions.R:269:3', 'test-numZero_parameter.R:5:1',
'test-plots.R:4:1', 'test-porter-benchmark.R:6:5', 'test-pump_mdes.R:37:3',
'test-pump_mdes.R:118:3', 'test-pump_mdes.R:151:3', 'test-pump_mdes.R:175:5',
'test-pump_mdes.R:214:3', 'test-pump_mdes.R:232:3', 'test-pump_mdes.R:252:3',
'test-pump_mdes.R:323:5', 'test-pump_power.R:38:3', 'test-pump_power.R:96:3',
'test-pump_power.R:138:3', 'test-pump_power.R:163:3',
'test-pump_power.R:209:3', 'test-pump_power.R:244:5',
'test-pump_power.R:264:5', 'test-pump_power.R:284:3',
'test-pump_power.R:312:5', 'test-pump_power.R:361:3',
'test-pump_power.R:394:3', 'test-pump_power.R:415:5',
'test-pump_power.R:452:5', 'test-pump_power.R:552:5',
'test-pump_power.R:603:5', 'test-pump_power.R:645:5',
'test-pump_sample.R:423:5', 'test-pump_sample.R:488:5',
'test-pump_sample.R:561:5', 'test-pumpgridresult.R:37:5',
'test-update_functions.R:78:5', 'test-update_functions.R:107:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-pump_sample.R:233:3'): pump_sample 2 level/2 level ───────────
p2[2, "indiv.mean"] not equal to 0.8.
1/1 mismatches
[1] 0.821 - 0.8 == 0.021
[ FAIL 1 | WARN 0 | SKIP 42 | PASS 252 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘pump_demo.Rmd’ using rmarkdown
Quitting from lines 18-44 [initialize] (pump_demo.Rmd)
Error: processing vignette 'pump_demo.Rmd' failed with diagnostics:
package or namespace load failed for 'kableExtra' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called 'systemfonts'
--- failed re-building ‘pump_demo.Rmd’
--- re-building ‘pump_sample_demo.Rmd’ using rmarkdown
--- finished re-building ‘pump_sample_demo.Rmd’
--- re-building ‘pump_simulate.Rmd’ using rmarkdown
--- finished re-building ‘pump_simulate.Rmd’
SUMMARY: processing the following file failed:
‘pump_demo.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64